2isa suite

The 2isa suite is a collection of programs that can extract metadata out of various metabolomics file formats and write them to ISA-Tab files, creating the backbone for an ISA-Tab study that can then be shared on databases such as MetaboLights. Right now the following source files are supported:

.mzML
XML-like files containing derived spectral data of mass spectrometry scans
.imzML
XML-like files containing metadata about imaging mass spectrometry scans
.nmrML
XML-like files containing derived spectral data of nuclear magnetic resonance scans
http://i.imgur.com/i7eXQDS.png

Documentation

Command Line Applications / Libraries

The command line applications / libraries are currently divided into the mzml2isa package (covering mzML and imzML) and nmrml2isa (covering nmrML).

Graphical User Interfaces

The graphical user interfaces are divided into mzmlisa-qt (covering mzML), imzml2isa-qt (covering imzML) and nmrml2isa-qt (covering nmrML).

Galaxy interfaces

The Galaxy interfaces are divided into mzml2isa-galaxy (covering mzML and imzML) and nmrml2isa-galaxy (covering nmrML)

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